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Overview

The SSG has access to a number of HPC resources that can be used to speed up the different kinds of simulations and analyses our section conducts. This hands-on workshop is aimed at enabling SSGers to use the Linux Beowulf clusters and advance science in an effective manner.

Logistics

Location

Ryals Public Health Building, 4th floor computer lab

Date

Friday, October 17th, 2008

What to do before your arrival

  • Make sure you have an SOPH domain account to log into the lab computer.
  • Make sure you have a cluster account to log into the head node of the cluster.
    • Register for an account by filling out a request ticket.
    • Indicate on the ticket that you would like an account for both the Cheaha and Coosa clusters.
  • Log in at least once to the cluster using ssh.

Agenda

Time

Topic

10:00 - 10:15 AM

Attendees settle in and connect to the cluster.

10:15 - 11:15 AM

How to submit a job to the cluster: A 3rd party statistical genetics program example.

11:15 - 12:15 PM

How to submit a job on the cluster: An R example.

12:15 PM

Adjourn.

Handout

Printed handouts of the lab outline will be available. You can also preview the online version.

Documentation

Q & A

  • Which cluster should I choose?
  • How do I figure out how long my job will take?
  • The job queue seems full, should I wait to submit my job to the queue?
Labels
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